JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX2_chr12_130784600_130844250	0/0	t0040	2575	1	1	0	0	0	0	copy fasta	STX2	chr12	130784600	130844250
STX3_chr11_59750376_59810878	1/1	t0001	5285	124	30	33	39	3	17	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0002	5304	24	5	9	8	0	2	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0003	5284	9	4	2	2	0	1	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0004	5283	8	8	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0005	5304	7	7	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0006	5285	5	4	1	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0007	5285	4	0	3	0	1	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0008	5283	4	3	1	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0009	5284	3	3	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0010	5294	3	0	0	3	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0011	5314	2	2	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0012	5284	2	2	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0013	5285	2	0	0	0	0	2	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0014	5311	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0015	5305	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0016	5304	1	0	1	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0017	5305	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0018	5294	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0019	5285	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0020	5285	1	0	1	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0021	5285	1	0	0	0	0	1	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0022	5285	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0023	5285	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0024	5285	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0025	5285	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0026	5285	1	0	1	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0027	5285	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0028	5285	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0029	5285	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0030	5285	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0031	5284	1	1	0	0	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0032	5285	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0033	5285	1	0	0	1	0	0	copy fasta	STX3	chr11	59750376	59810878
STX3_chr11_59750376_59810878	0/0	t0034	5285	1	0	0	0	0	1	copy fasta	STX3	chr11	59750376	59810878
STX4_chr16_31028558_31045164	1/1	t0001	517	131	30	43	38	9	9	copy fasta	STX4	chr16	31028558	31045164
STX4_chr16_31028558_31045164	0/0	t0002	517	128	52	29	21	3	23	copy fasta	STX4	chr16	31028558	31045164
STX4_chr16_31028558_31045164	0/0	t0003	517	1	0	0	1	0	0	copy fasta	STX4	chr16	31028558	31045164
STX4_chr16_31028558_31045164	0/0	t0004	517	1	0	0	1	0	0	copy fasta	STX4	chr16	31028558	31045164
STX4_chr16_31028558_31045164	0/0	t0005	517	1	0	0	1	0	0	copy fasta	STX4	chr16	31028558	31045164
STX5_chr11_62801860_62837051	1/1	t0001	727	378	87	62	183	16	28	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	t0002	727	1	1	0	0	0	0	copy fasta	STX5	chr11	62801860	62837051
STX5_chr11_62801860_62837051	0/0	t0003	727	1	0	0	1	0	0	copy fasta	STX5	chr11	62801860	62837051
STX6_chr1_180967725_181027870	0/1	t0001	4045	171	26	29	95	9	11	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	1/0	t0002	4043	128	33	18	53	3	20	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0003	4043	8	7	1	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0004	4045	7	0	7	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0005	4043	4	0	0	4	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0006	4043	3	3	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0007	4043	2	2	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870