JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX6_chr1_180967725_181027870	0/0	t0008	4043	2	0	2	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0009	4043	2	2	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0010	4043	2	2	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0011	4045	2	0	2	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0012	4043	2	2	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0013	4045	1	0	0	0	0	1	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0014	4043	1	0	1	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0015	4043	1	0	1	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0016	4043	1	1	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0017	4045	1	0	0	0	0	1	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0018	4043	1	0	0	0	0	1	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0019	4043	1	1	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0020	4043	1	1	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0021	4043	1	1	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0022	4043	1	0	1	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0023	4045	1	1	0	0	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0024	4045	1	0	0	1	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0025	4045	1	0	0	1	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0026	4045	1	0	0	0	0	1	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0027	4045	1	0	0	1	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0028	4043	1	0	0	1	0	0	copy fasta	STX6	chr1	180967725	181027870
STX6_chr1_180967725_181027870	0/0	t0029	4043	1	0	0	0	0	1	copy fasta	STX6	chr1	180967725	181027870
STX7_chr6_132440867_132518116	0/1	t0001	15059	57	11	8	21	2	14	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0002	15061	21	0	0	21	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0003	15060	18	2	2	12	0	2	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0004	15060	16	0	3	13	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0005	15061	16	2	8	0	4	2	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0006	15060	15	2	1	11	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0007	15060	11	0	1	9	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0008	15060	9	2	0	4	0	3	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0009	15061	9	0	6	0	0	3	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0010	15059	8	0	5	3	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0011	15059	7	2	0	5	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0012	15059	6	0	0	6	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0013	15059	6	0	1	5	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0014	15060	6	5	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0015	15058	6	6	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0016	15060	5	5	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0017	15060	4	0	0	4	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0018	15060	4	4	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0019	15059	4	4	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0020	15059	4	4	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0021	15061	4	0	0	4	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0022	15061	4	0	0	2	2	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	1/0	t0023	15060	4	1	1	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0024	15061	4	0	0	4	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0025	15061	4	0	3	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0026	15060	3	3	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0027	15060	3	3	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0028	15059	3	0	3	0	0	0	copy fasta	STX7	chr6	132440867	132518116