JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX7_chr6_132440867_132518116	0/0	t0029	15059	3	0	2	0	1	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0030	15059	3	0	0	2	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0031	15060	3	0	0	3	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0032	15060	3	3	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0033	15053	3	0	0	0	0	3	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0034	15059	3	0	0	3	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0035	15057	2	1	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0036	15060	2	0	0	0	1	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0037	15060	2	0	0	2	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0038	15061	2	0	0	1	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0039	15059	2	0	0	2	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0040	15059	2	0	0	2	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0041	15059	2	0	0	2	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0042	15059	2	0	0	2	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0043	15060	2	1	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0044	15060	2	0	2	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0045	15058	2	2	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0046	15062	2	0	0	2	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0047	15061	2	2	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0048	15061	2	2	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0049	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0050	15058	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0051	15060	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0052	15057	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0053	15057	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0054	15058	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0055	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0056	15060	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0057	15057	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0058	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0059	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0060	15060	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0061	15061	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0062	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0063	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0064	15060	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0065	15060	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0066	15060	1	0	0	0	1	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0067	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0068	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0069	15060	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0070	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0071	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0072	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0073	15059	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0074	15059	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0075	15059	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0076	15059	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0077	15061	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0078	15059	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116