JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STX7_chr6_132440867_132518116	0/0	t0079	15059	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0080	15059	1	0	0	0	1	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0081	15059	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0082	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0083	15059	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0084	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0085	15060	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0086	15059	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0087	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0088	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0089	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0090	15059	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0091	15059	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0092	15060	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0093	15061	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0094	15059	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0095	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0096	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0097	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0098	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0099	15060	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0100	15058	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0101	15061	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0102	15062	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0103	15062	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0104	15062	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0105	15061	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0106	15062	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0107	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0108	15063	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0109	15061	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0110	15060	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0111	15062	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0112	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0113	15062	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0114	15061	1	0	1	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0115	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0116	15061	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0117	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0118	15060	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0119	15053	1	0	0	0	0	1	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0120	15058	1	1	0	0	0	0	copy fasta	STX7	chr6	132440867	132518116
STX7_chr6_132440867_132518116	0/0	t0121	15061	1	0	0	1	0	0	copy fasta	STX7	chr6	132440867	132518116
STX8_chr17_9245471_9580820	1/1	t0001	120	127	53	19	31	7	15	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	t0002	120	60	20	21	3	3	13	copy fasta	STX8	chr17	9245471	9580820
STX8_chr17_9245471_9580820	0/0	t0003	120	1	1	0	0	0	0	copy fasta	STX8	chr17	9245471	9580820
STXBP1_chr9_127607277_127697699	1/1	t0001	1970	238	51	63	83	10	29	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0002	1970	25	24	1	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0003	1970	10	0	0	10	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0004	1970	9	0	0	9	0	0	copy fasta	STXBP1	chr9	127607277	127697699