JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STXBP1_chr9_127607277_127697699	0/0	t0005	1970	6	6	0	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0006	1970	4	0	0	4	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0007	1970	2	0	0	0	0	2	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0008	1970	1	0	0	1	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0009	1970	1	1	0	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0010	1970	1	0	0	1	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0011	1970	1	0	0	0	0	1	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0012	1970	1	1	0	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP1_chr9_127607277_127697699	0/0	t0013	1970	1	1	0	0	0	0	copy fasta	STXBP1	chr9	127607277	127697699
STXBP2_chr19_7632110_7652873	0/0	t0001	104	412	84	84	184	14	46	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	t0002	104	9	9	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	t0003	102	5	5	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	t0004	104	1	1	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP2_chr19_7632110_7652873	0/0	t0005	104	1	1	0	0	0	0	copy fasta	STXBP2	chr19	7632110	7652873
STXBP3_chr1_108741674_108814523	0/1	t0001	711	179	62	34	47	12	23	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	t0002	711	146	26	26	80	2	12	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	1/0	t0003	711	7	6	0	0	0	0	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	t0004	711	1	0	0	0	0	1	copy fasta	STXBP3	chr1	108741674	108814523
STXBP3_chr1_108741674_108814523	0/0	t0005	711	1	0	0	1	0	0	copy fasta	STXBP3	chr1	108741674	108814523
STXBP4_chr17_54963765_55178632	0/1	t0001	13929	54	2	12	34	0	5	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0002	13929	33	2	0	29	0	2	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0003	13936	22	0	7	12	0	3	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0004	13917	21	0	0	20	0	1	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0005	13929	21	3	11	0	2	5	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0006	13937	14	2	6	5	1	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0007	13930	14	1	0	9	0	4	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0008	13935	12	5	0	7	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0009	13928	7	7	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0010	13937	5	0	2	1	0	2	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0011	13938	5	2	1	2	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0012	13933	5	5	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0013	13929	5	5	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0014	13936	4	0	0	4	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0015	13935	4	4	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0016	13936	4	0	4	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0017	13938	4	0	0	4	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0018	13933	4	0	1	3	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0019	13931	3	3	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0020	13929	3	3	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0021	13933	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0022	13934	2	1	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0023	13936	2	0	0	2	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0024	13935	2	0	0	2	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0025	13936	2	0	0	0	0	2	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0026	13936	2	0	2	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0027	13917	2	0	0	2	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0028	13934	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0029	13933	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0030	13938	2	0	1	0	1	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0031	13932	2	2	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632