Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMP8B_chr1_39752182_39793865	0/0	t0027	3618	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0028	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0029	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0030	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0031	3618	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0032	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0033	3618	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0034	3618	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0035	3616	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0036	3618	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/1	t0037	3618	1	0	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0038	3618	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	t0039	3618	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMPER_chr7_33900539_34161427	1/0	t0001	3230	94	19	17	40	5	12	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0002	3230	33	0	7	16	0	10	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0003	3229	21	20	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0004	3230	15	12	3	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/1	t0005	3232	15	0	6	3	1	4	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0006	3229	8	5	2	0	0	1	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0007	3230	7	6	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0008	3230	4	0	0	4	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0009	3230	3	0	0	3	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0010	3231	3	2	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0011	3230	2	0	0	2	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0012	3231	2	2	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0013	3230	2	2	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0014	3231	2	2	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0015	3230	2	0	0	0	2	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0016	3232	2	0	2	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0017	3232	2	0	2	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0018	3230	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0019	3229	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0020	3230	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0021	3229	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0022	3230	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0023	3229	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0024	3229	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0025	3230	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0026	3230	1	0	0	0	0	1	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0027	3230	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0028	3230	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0029	3230	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0030	3229	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0031	3230	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	t0032	3232	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPR1A_chr10_86751619_86932969	0/0	t0001	4819	31	7	7	10	0	7	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0002	4819	28	4	9	10	2	3	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0003	4825	26	0	5	15	1	5	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0004	4826	17	1	4	8	3	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0005	4819	10	4	3	3	0	0	copy fasta	BMPR1A	chr10	86751619	86932969