JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STXBP4_chr17_54963765_55178632	0/0	t0082	13937	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0083	13937	1	0	0	0	0	1	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0084	13935	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0085	13935	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0086	13937	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0087	13938	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0088	13939	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0089	13939	1	0	0	0	0	1	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0090	13928	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0091	13933	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0092	13935	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0093	13933	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0094	13936	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0095	13934	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0096	13932	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0097	13935	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0098	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0099	13930	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0100	13930	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0101	13931	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0102	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0103	13928	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0104	13929	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0105	13929	1	0	0	0	0	1	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0106	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0107	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0108	13929	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0109	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0110	13929	1	0	0	0	0	1	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0111	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0112	13931	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0113	13931	1	0	0	0	0	1	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0114	13929	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0115	13929	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0116	13927	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0117	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	1/0	t0118	13929	1	0	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0119	13929	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0120	13929	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0121	13929	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0122	13930	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0123	13930	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0124	13931	1	0	1	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0125	13930	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0126	13930	1	0	0	0	1	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0127	13930	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0128	13931	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0129	13933	1	0	0	1	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0130	13928	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0131	13929	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632