JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STXBP4_chr17_54963765_55178632	0/0	t0132	13929	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0133	13929	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP4_chr17_54963765_55178632	0/0	t0134	13930	1	1	0	0	0	0	copy fasta	STXBP4	chr17	54963765	55178632
STXBP5L_chr3_120903205_121429761	0/0	t0001	5803	73	15	17	24	6	11	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	1/0	t0002	5803	64	17	21	15	5	5	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/1	t0003	5804	58	11	7	30	2	7	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0004	5778	17	0	2	10	1	4	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0005	5803	17	11	4	0	2	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0006	5778	6	1	4	0	0	1	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0007	5820	6	0	6	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0008	5801	5	4	1	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0009	5803	4	4	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0010	5802	4	4	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0011	5803	4	0	3	0	0	1	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0012	5805	3	3	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0013	5803	3	3	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0014	5803	3	0	0	3	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0015	5803	3	3	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0016	5803	2	0	2	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0017	5803	2	2	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0018	5803	1	0	0	1	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0019	5803	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0020	5803	1	0	0	1	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0021	5803	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0022	5803	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0023	5803	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0024	5803	1	0	0	1	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0025	5778	1	0	0	0	0	1	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0026	5803	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0027	5820	1	0	1	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0028	5803	1	0	0	0	0	1	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0029	5804	1	0	0	0	0	1	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0030	5804	1	0	0	1	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0031	5803	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0032	5804	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5L_chr3_120903205_121429761	0/0	t0033	5803	1	1	0	0	0	0	copy fasta	STXBP5L	chr3	120903205	121429761
STXBP5_chr6_147199417_147395473	1/1	t0001	5835	103	6	19	60	7	9	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0002	5835	102	22	27	33	5	15	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0003	5835	36	1	2	31	0	2	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0004	5835	8	0	0	8	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0005	5835	7	7	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0006	5835	7	0	2	5	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0007	5835	7	7	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0008	5836	7	7	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0009	5835	6	6	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0010	5835	6	0	0	6	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0011	5835	5	5	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0012	5835	5	5	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0013	5833	4	0	1	0	1	2	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0014	5835	4	4	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473