JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STXBP5_chr6_147199417_147395473	0/0	t0015	5838	4	3	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0016	5836	3	1	0	2	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0017	5836	3	0	0	3	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0018	5835	3	2	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0019	5837	3	3	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0020	5835	2	0	1	0	1	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0021	5835	2	2	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0022	5835	2	0	0	2	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0023	5835	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0024	5835	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0025	5836	1	0	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0026	5833	1	0	0	0	0	1	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0027	5837	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0028	5835	1	0	1	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0029	5835	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0030	5836	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0031	5835	1	0	0	0	0	1	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0032	5835	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0033	5835	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0034	5836	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0035	5835	1	0	0	0	0	1	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0036	5835	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0037	5835	1	0	0	0	0	1	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0038	5835	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0039	5835	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0040	5835	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0041	5835	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0042	5835	1	0	0	1	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP5_chr6_147199417_147395473	0/0	t0043	5835	1	1	0	0	0	0	copy fasta	STXBP5	chr6	147199417	147395473
STXBP6_chr14_24804454_25055147	0/0	t0001	3566	13	3	3	4	1	2	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0002	3574	9	0	8	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0003	3568	9	1	1	2	1	4	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0004	3571	9	0	1	6	0	2	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0005	3572	7	1	3	0	0	3	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	1/0	t0006	3558	6	3	1	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0007	3569	6	6	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0008	3576	6	0	4	0	0	2	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0009	3571	5	0	0	5	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0010	3567	5	0	0	5	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0011	3573	5	0	0	4	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0012	3573	5	0	1	4	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0013	3570	4	0	1	3	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0014	3569	4	1	2	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0015	3565	4	0	2	2	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0016	3563	4	0	0	4	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/1	t0017	3564	4	1	1	0	1	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0018	3565	4	4	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0019	3567	3	0	2	0	1	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0020	3567	3	0	0	3	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0021	3570	3	0	1	1	0	1	copy fasta	STXBP6	chr14	24804454	25055147