JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STXBP6_chr14_24804454_25055147	0/0	t0022	3569	3	1	0	1	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0023	3569	3	0	0	3	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0024	3579	3	0	0	0	1	2	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0025	3573	2	0	1	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0026	3569	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0027	3562	2	0	0	2	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0028	3578	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0029	3572	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0030	3567	2	1	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0031	3566	2	0	1	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0032	3561	2	0	0	0	0	2	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0033	3564	2	1	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0034	3564	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0035	3574	2	0	2	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0036	3568	2	1	0	0	1	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0037	3566	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0038	3569	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0039	3569	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0040	3565	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0041	3571	2	0	1	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0042	3572	2	0	0	1	1	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0043	3570	2	0	0	0	0	2	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0044	3579	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0045	3575	2	0	1	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0046	3565	2	2	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0047	3578	2	0	0	2	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0048	3572	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0049	3566	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0050	3568	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0051	3564	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0052	3562	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0053	3573	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0054	3563	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0055	3559	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0056	3565	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0057	3571	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0058	3567	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0059	3575	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0060	3573	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0061	3565	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0062	3559	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0063	3581	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0064	3579	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0065	3575	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0066	3569	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0067	3567	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0068	3572	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0069	3566	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0070	3566	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0071	3560	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147