JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STXBP6_chr14_24804454_25055147	0/0	t0072	3571	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0073	3578	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0074	3575	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0075	3567	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0076	3565	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0077	3564	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0078	3564	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0079	3573	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0080	3569	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0081	3567	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0082	3573	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0083	3559	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0084	3558	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0085	3580	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0086	3574	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0087	3570	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0088	3560	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0089	3558	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0090	3571	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0091	3565	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0092	3569	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0093	3567	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0094	3570	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0095	3579	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0096	3577	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0097	3575	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0098	3574	1	0	1	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0099	3570	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0100	3590	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0101	3580	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0102	3566	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0103	3580	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0104	3576	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0105	3574	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0106	3571	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0107	3565	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0108	3571	1	0	0	0	1	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0109	3575	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0110	3573	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0111	3580	1	0	0	1	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0112	3574	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0113	3568	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0114	3576	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0115	3572	1	1	0	0	0	0	copy fasta	STXBP6	chr14	24804454	25055147
STXBP6_chr14_24804454_25055147	0/0	t0116	3570	1	0	0	0	0	1	copy fasta	STXBP6	chr14	24804454	25055147
STYK1_chr12_10613923_10679052	0/0	t0001	1507	104	16	19	46	7	16	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0002	1509	82	5	10	50	3	14	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/1	t0003	1511	50	0	10	31	5	3	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	1/0	t0004	1503	36	13	11	0	2	9	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0005	1503	23	20	3	0	0	0	copy fasta	STYK1	chr12	10613923	10679052