JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STYK1_chr12_10613923_10679052	0/0	t0006	1505	10	7	3	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0007	1509	9	0	3	5	0	1	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0008	1507	8	8	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0009	1505	7	7	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0010	1507	5	1	2	2	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0011	1505	4	3	1	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0012	1503	4	4	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0013	1504	4	2	2	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0014	1509	4	0	0	4	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0015	1513	2	0	1	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0016	1503	2	2	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0017	1511	2	0	2	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0018	1503	1	0	0	0	1	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0019	1503	1	0	1	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0020	1505	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0021	1509	1	0	0	0	0	1	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0022	1509	1	0	1	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0023	1509	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0024	1503	1	0	1	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0025	1503	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0026	1507	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0027	1503	1	1	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0028	1503	1	1	0	0	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYK1_chr12_10613923_10679052	0/0	t0029	1511	1	0	0	1	0	0	copy fasta	STYK1	chr12	10613923	10679052
STYXL1_chr7_75991342_76053000	0/0	t0001	470	186	50	24	96	4	12	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/1	t0002	470	128	11	36	52	10	18	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	t0003	470	22	6	3	1	2	10	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	1/0	t0004	470	10	9	0	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	t0005	470	5	4	1	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	t0006	470	2	2	0	0	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	t0007	470	1	0	0	1	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	t0008	470	1	0	0	1	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL1_chr7_75991342_76053000	0/0	t0009	470	1	0	0	1	0	0	copy fasta	STYXL1	chr7	75991342	76053000
STYXL2_chr1_167089075_167134165	0/1	t0001	693	162	30	24	96	3	8	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	t0002	694	76	42	10	18	3	3	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	t0003	694	55	11	18	2	7	17	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	1/0	t0004	694	50	3	22	3	3	18	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	t0005	694	12	11	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	t0006	693	4	0	0	4	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	t0007	694	1	1	0	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	t0008	694	1	0	1	0	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYXL2_chr1_167089075_167134165	0/0	t0009	694	1	0	0	1	0	0	copy fasta	STYXL2	chr1	167089075	167134165
STYX_chr14_52725166_52779989	0/1	t0001	4196	109	4	33	50	8	13	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0002	4193	96	11	17	45	6	17	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0003	4190	44	9	6	27	0	2	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0004	4195	15	8	1	6	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0005	4194	9	0	0	9	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0006	4193	8	8	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0007	4190	5	2	3	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0008	4197	5	5	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989