JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
STYX_chr14_52725166_52779989	0/0	t0009	4188	5	5	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0010	4190	4	4	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0011	4192	4	0	1	3	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0012	4195	4	0	0	4	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0013	4187	3	0	0	3	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0014	4192	3	2	1	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0015	4197	3	3	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0016	4193	3	3	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0017	4194	3	1	0	2	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0018	4195	2	2	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0019	4191	2	0	1	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0020	4188	2	2	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0021	4194	2	0	0	0	0	2	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0022	4195	2	2	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0023	4190	2	0	0	2	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0024	4193	2	0	0	2	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0025	4196	2	2	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0026	4193	2	2	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0027	4195	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0028	4195	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0029	4190	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0030	4189	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0031	4190	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0032	4191	1	0	1	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0033	4191	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0034	4195	1	0	1	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0035	4196	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0036	4199	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0037	4193	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0038	4189	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0039	4189	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0040	4195	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0041	4191	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0042	4196	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0043	4191	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0044	4192	1	0	0	0	0	1	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0045	4188	1	0	1	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0046	4196	1	0	1	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0047	4193	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	1/0	t0048	4193	1	0	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0049	4189	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0050	4193	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0051	4193	1	0	1	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0052	4193	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0053	4193	1	0	0	1	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0054	4196	1	1	0	0	0	0	copy fasta	STYX	chr14	52725166	52779989
STYX_chr14_52725166_52779989	0/0	t0055	4193	1	0	0	0	0	1	copy fasta	STYX	chr14	52725166	52779989
SUB1_chr5_32580557_32609079	1/0	t0001	3065	202	42	35	91	7	26	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/1	t0002	3066	71	2	20	32	4	12	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0003	3064	37	0	8	29	0	0	copy fasta	SUB1	chr5	32580557	32609079