JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUB1_chr5_32580557_32609079	0/0	t0004	3066	36	9	2	20	2	3	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0005	3065	24	0	1	16	2	5	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0006	3065	18	17	1	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0007	3065	10	0	2	8	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0008	3066	9	8	1	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0009	3065	7	0	0	7	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0010	3065	6	6	0	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0011	3065	4	4	0	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0012	3066	2	0	0	2	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0013	3065	2	0	0	2	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0014	3065	2	0	1	0	1	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0015	3065	2	0	2	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0016	3065	1	1	0	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0017	3065	1	1	0	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0018	3065	1	1	0	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0019	3065	1	0	0	1	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0020	3065	1	0	0	1	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0021	3064	1	0	0	1	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0022	3065	1	0	1	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0023	3065	1	0	0	1	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0024	3065	1	0	0	0	0	1	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0025	3066	1	0	0	1	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0026	3065	1	0	0	1	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0027	3065	1	0	0	0	0	1	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0028	3065	1	1	0	0	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUB1_chr5_32580557_32609079	0/0	t0029	3065	1	0	0	1	0	0	copy fasta	SUB1	chr5	32580557	32609079
SUCLA2_chr13_47937656_48006273	0/0	t0001	720	293	67	54	133	15	24	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/1	t0002	720	22	0	10	2	0	9	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	1/0	t0003	720	20	5	3	1	1	9	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	t0004	720	13	13	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	t0005	720	3	0	0	3	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	t0006	721	3	0	2	0	0	1	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	t0007	720	1	1	0	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	t0008	720	1	0	0	1	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	t0009	720	1	0	0	0	0	1	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLA2_chr13_47937656_48006273	0/0	t0010	720	1	0	1	0	0	0	copy fasta	SUCLA2	chr13	47937656	48006273
SUCLG1_chr2_84418528_84464280	0/1	t0001	230	170	35	48	44	14	28	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	1/0	t0002	230	87	53	13	13	1	6	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	0/0	t0003	230	3	3	0	0	0	0	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	0/0	t0004	230	1	0	0	0	1	0	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	0/0	t0005	230	1	0	1	0	0	0	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	0/0	t0006	230	1	0	0	1	0	0	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG1_chr2_84418528_84464280	0/0	t0007	230	1	1	0	0	0	0	copy fasta	SUCLG1	chr2	84418528	84464280
SUCLG2_chr3_67369719_67659612	0/0	t0001	1053	135	34	18	66	2	15	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0002	1052	49	13	7	24	1	4	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0003	1052	36	18	2	16	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	1/0	t0004	1052	23	10	6	1	1	4	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0005	1053	12	6	2	3	0	1	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0006	1052	6	0	0	6	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/1	t0007	1052	4	0	3	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612