JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUCLG2_chr3_67369719_67659612	0/0	t0008	1053	2	0	0	2	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0009	1053	2	1	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0010	1052	2	2	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0011	1053	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0012	1053	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0013	1053	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0014	1052	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0015	1052	1	0	0	1	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0016	1052	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0017	1052	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0018	1052	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCLG2_chr3_67369719_67659612	0/0	t0019	1053	1	1	0	0	0	0	copy fasta	SUCLG2	chr3	67369719	67659612
SUCNR1_chr3_151868643_151889619	0/0	t0001	3173	40	11	8	13	4	4	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0002	3175	37	14	10	8	1	4	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0003	3171	22	4	0	12	1	5	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0004	3171	19	0	2	17	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	1/0	t0005	3177	17	5	4	6	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0006	3181	17	0	4	10	1	2	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0007	3179	14	0	2	12	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0008	3169	13	0	0	13	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0009	3181	13	0	9	2	1	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0010	3179	13	3	4	5	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0011	3177	13	0	2	11	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0012	3183	12	2	3	7	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0013	3181	12	4	3	5	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0014	3179	11	0	7	4	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0015	3179	10	0	0	10	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0016	3185	10	0	1	8	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0017	3183	9	0	1	8	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0018	3181	8	0	0	7	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0019	3169	8	5	1	1	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0020	3177	8	4	4	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0021	3160	7	0	6	0	1	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0022	3173	6	0	0	6	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0023	3185	6	3	0	2	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0024	3183	6	0	1	5	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0025	3183	5	0	2	3	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0026	3187	5	1	0	4	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0027	3179	5	3	0	1	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0028	3159	5	5	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0029	3181	5	0	2	2	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0030	3177	5	0	0	5	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0031	3185	4	0	0	4	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0032	3173	4	0	0	0	0	4	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0033	3171	4	0	0	4	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0034	3161	4	4	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0035	3175	2	0	0	2	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0036	3173	2	0	0	2	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0037	3173	2	1	1	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0038	3185	2	0	0	1	1	0	copy fasta	SUCNR1	chr3	151868643	151889619