Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AAK1_chr2_69452997_69648739	0/0	t0054	18273	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0055	18273	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/1	t0056	18276	1	0	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0057	18272	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0058	18271	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0059	18272	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0060	18273	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0061	18273	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0062	18273	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0063	18273	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0064	18272	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0065	18277	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0066	18276	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0067	18276	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0068	18275	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0069	18276	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0070	18270	1	0	0	0	1	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0071	18243	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0072	18242	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0073	18269	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0074	18275	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0075	18275	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0076	18275	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0077	18270	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0078	18274	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0079	18273	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0080	18279	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0081	18279	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0082	18276	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0083	18276	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0084	18281	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0085	18273	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0086	18271	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0087	18271	1	0	0	0	1	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0088	18271	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0089	18275	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0090	18271	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0091	18270	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0092	18271	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0093	18271	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	1/0	t0094	18272	1	0	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0095	18273	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0096	18271	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0097	18272	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0098	18241	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0099	18270	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0100	18269	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0101	18274	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0102	18274	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0103	18276	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739