Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMPR1A_chr10_86751619_86932969	0/0	t0006	4811	10	9	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0007	4832	9	7	1	0	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0008	4833	7	0	1	0	2	4	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/1	t0009	4834	7	0	1	3	0	2	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0010	4825	7	6	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0011	4819	6	0	4	0	1	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	1/0	t0012	4819	6	1	0	3	1	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0013	4835	5	0	5	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0014	4829	5	5	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0015	4835	4	0	0	4	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0016	4825	4	0	0	4	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0017	4827	4	0	1	3	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0018	4819	3	0	1	1	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0019	4819	3	1	0	2	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0020	4830	3	3	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0021	4825	3	3	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0022	4831	3	0	2	0	1	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0023	4811	3	0	3	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0024	4819	3	0	0	3	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0025	4833	3	3	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0026	4819	2	0	2	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0027	4824	2	0	0	2	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0028	4825	2	0	0	1	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0029	4825	2	0	0	2	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0030	4826	2	0	2	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0031	4829	2	1	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0032	4830	2	2	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0033	4832	2	1	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0034	4836	2	2	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0035	4811	2	2	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0036	4831	1	0	0	0	1	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0037	4830	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0038	4834	1	0	0	0	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0039	4831	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0040	4831	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0041	4832	1	0	0	0	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0042	4834	1	0	0	0	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0043	4834	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0044	4836	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0045	4827	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0046	4824	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0047	4826	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0048	4826	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0049	4819	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0050	4822	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0051	4811	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0052	4819	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0053	4819	1	0	0	0	1	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0054	4819	1	0	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0055	4828	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969