JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUCNR1_chr3_151868643_151889619	0/0	t0039	3175	2	0	0	2	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0040	3162	2	2	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0041	3181	2	2	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0042	3189	2	1	0	0	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0043	3177	2	0	0	2	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0044	3189	2	0	0	0	2	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0045	3169	2	2	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0046	3169	2	0	2	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0047	3185	2	0	2	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0048	3183	2	0	0	0	0	2	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0049	3187	2	1	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0050	3175	2	0	2	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0051	3171	2	1	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0052	3178	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0053	3176	1	0	1	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0054	3174	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0055	3177	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0056	3175	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0057	3173	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0058	3191	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0059	3189	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0060	3189	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0061	3187	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0062	3179	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0063	3175	1	0	0	0	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0064	3173	1	0	0	0	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0065	3171	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0066	3171	1	0	0	0	1	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0067	3167	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0068	3169	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0069	3183	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0070	3181	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0071	3184	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0072	3182	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0073	3156	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0074	3191	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0075	3181	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0076	3179	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0077	3173	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0078	3169	1	0	0	0	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0079	3183	1	0	0	0	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/1	t0080	3181	1	0	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0081	3173	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0082	3179	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0083	3177	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0084	3159	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0085	3181	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0086	3173	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0087	3181	1	0	1	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0088	3175	1	0	1	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619