JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUCNR1_chr3_151868643_151889619	0/0	t0089	3173	1	0	0	0	1	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0090	3177	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0091	3185	1	0	0	0	0	1	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0092	3183	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0093	3183	1	0	0	0	1	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0094	3181	1	1	0	0	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0095	3175	1	0	0	0	1	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCNR1_chr3_151868643_151889619	0/0	t0096	3157	1	0	0	1	0	0	copy fasta	SUCNR1	chr3	151868643	151889619
SUCO_chr1_172528150_172616833	1/1	t0001	1861	125	19	23	64	5	12	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0002	1861	108	43	20	33	2	10	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0003	1861	68	7	10	43	3	5	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0004	1861	14	14	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0005	1861	12	1	9	0	1	1	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0006	1861	4	2	0	0	0	2	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0007	1861	2	0	0	2	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0008	1861	2	2	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0009	1861	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0010	1861	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0011	1861	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0012	1861	1	1	0	0	0	0	copy fasta	SUCO	chr1	172528150	172616833
SUCO_chr1_172528150_172616833	0/0	t0013	1861	1	0	0	0	1	0	copy fasta	SUCO	chr1	172528150	172616833
SUDS3_chr12_118371555_118423033	0/0	t0001	3738	108	14	11	68	5	10	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	1/1	t0002	3738	103	17	19	53	3	9	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0003	3738	40	0	0	40	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0004	3738	24	1	7	14	0	2	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0005	3736	13	0	4	2	3	4	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0006	3737	12	0	4	0	5	3	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0007	3737	10	6	0	4	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0008	3740	9	9	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0009	3737	9	9	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0010	3737	8	1	5	0	1	1	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0011	3736	7	7	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0012	3738	6	6	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0013	3738	6	6	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0014	3738	5	0	5	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0015	3738	4	0	0	4	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0016	3737	3	3	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0017	3739	3	0	1	1	1	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0018	3738	3	0	2	0	0	1	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0019	3736	2	0	2	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0020	3738	2	0	0	2	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0021	3738	2	0	2	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0022	3739	2	2	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0023	3738	2	0	0	0	0	2	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0024	3738	2	2	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0025	3739	2	2	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0026	3738	1	0	0	0	0	1	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0027	3738	1	0	0	1	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0028	3738	1	0	0	0	0	1	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0029	3738	1	0	1	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033