JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUDS3_chr12_118371555_118423033	0/0	t0030	3737	1	1	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0031	3738	1	0	0	1	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0032	3738	1	0	0	1	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0033	3738	1	0	1	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0034	3737	1	0	1	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0035	3737	1	0	1	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0036	3738	1	0	0	0	0	1	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0037	3738	1	0	0	1	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0038	3739	1	0	0	1	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0039	3738	1	1	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0040	3739	1	0	0	1	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0041	3737	1	1	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0042	3737	1	1	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0043	3738	1	0	0	0	0	1	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0044	3739	1	1	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0045	3739	1	1	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUDS3_chr12_118371555_118423033	0/0	t0046	3739	1	1	0	0	0	0	copy fasta	SUDS3	chr12	118371555	118423033
SUFU_chr10_102498972_102638535	0/1	t0001	3562	92	14	24	32	4	17	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0002	3562	64	7	8	39	2	8	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0003	3562	26	6	9	5	2	4	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0004	3562	21	0	5	16	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0005	3562	13	11	2	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0006	3562	12	0	0	8	0	4	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0007	3562	5	5	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0008	3562	2	2	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0009	3562	2	0	2	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0010	3562	2	2	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0011	3562	2	2	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0012	3562	2	0	2	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0013	3562	2	2	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0014	3562	2	2	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0015	3562	1	1	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0016	3562	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0017	3562	1	0	1	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0018	3562	1	0	0	0	0	1	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0019	3562	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0020	3562	1	1	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0021	3562	1	0	1	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0022	3562	1	0	1	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0023	3562	1	0	0	0	0	1	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0024	3562	1	0	0	0	0	1	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0025	3562	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0026	3562	1	1	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0027	3562	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0028	3562	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0029	3603	1	1	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0030	3562	1	0	1	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0031	3562	1	0	0	1	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	1/0	t0032	3562	1	0	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0033	3562	1	1	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535