JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUFU_chr10_102498972_102638535	0/0	t0034	3562	1	1	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUFU_chr10_102498972_102638535	0/0	t0035	3562	1	1	0	0	0	0	copy fasta	SUFU	chr10	102498972	102638535
SUGCT_chr7_40130005_40865763	0/0	t0001	301	8	2	6	0	0	0	copy fasta	SUGCT	chr7	40130005	40865763
SUGP1_chr19_19271033_19325509	0/1	t0001	629	144	33	30	58	9	13	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	t0002	629	143	45	23	54	3	18	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	0/0	t0003	629	39	16	12	0	2	9	copy fasta	SUGP1	chr19	19271033	19325509
SUGP1_chr19_19271033_19325509	1/0	t0004	629	6	0	1	0	2	2	copy fasta	SUGP1	chr19	19271033	19325509
SUGP2_chr19_18985893_19038517	0/1	t0001	2940	165	44	38	57	4	21	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	1/0	t0002	2941	39	5	10	14	2	7	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0003	2940	19	1	2	14	1	1	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0004	2941	11	0	1	9	0	1	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0005	2940	10	0	5	0	2	3	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0006	2940	10	10	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0007	2941	8	0	2	4	0	2	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0008	2940	8	8	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0009	2941	5	5	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0010	2940	4	2	2	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0011	2940	4	4	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0012	2940	3	3	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0013	2940	2	2	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0014	2941	2	0	0	0	0	2	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0015	2940	1	0	0	0	0	1	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0016	2941	1	0	0	0	1	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0017	2940	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0018	2940	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0019	2940	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0020	2940	1	1	0	0	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0021	2940	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0022	2940	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0023	2941	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0024	2940	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0025	2940	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGP2_chr19_18985893_19038517	0/0	t0026	2941	1	0	0	1	0	0	copy fasta	SUGP2	chr19	18985893	19038517
SUGT1_chr13_52647836_52705909	0/0	t0001	13170	51	3	14	22	5	7	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/1	t0002	13169	39	6	5	16	3	8	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0003	13169	28	0	4	21	0	3	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0004	13169	15	9	4	0	1	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0005	13168	13	1	2	9	1	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0006	13171	9	7	2	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0007	13170	7	1	1	5	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0008	13170	6	0	6	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0009	13168	5	5	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0010	13168	4	3	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0011	13169	4	0	0	4	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0012	13172	4	3	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0013	13169	4	0	4	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0014	13169	3	0	2	0	1	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0015	13159	3	3	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0016	13159	3	0	0	3	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0017	13169	3	3	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909