JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUGT1_chr13_52647836_52705909	0/0	t0018	13168	3	0	2	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0019	13165	3	0	3	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	1/0	t0020	13160	3	2	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0021	13168	2	2	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0022	13169	2	0	0	2	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0023	13157	2	0	0	1	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0024	13170	2	0	0	2	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0025	13170	2	0	1	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0026	13169	2	2	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0027	13169	2	2	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0028	13170	2	0	0	0	1	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0029	13169	2	0	0	0	0	2	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0030	13167	2	1	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0031	13171	2	0	1	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0032	13168	2	2	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0033	13168	2	2	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0034	13160	2	1	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0035	13170	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0036	13169	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0037	13170	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0038	13169	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0039	13168	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0040	13168	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0041	13166	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0042	13169	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0043	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0044	13169	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0045	13159	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0046	13159	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0047	13160	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0048	13159	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0049	13158	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0050	13170	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0051	13168	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0052	13170	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0053	13170	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0054	13170	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0055	13166	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0056	13167	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0057	13159	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0058	13168	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0059	13169	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0060	13169	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0061	13169	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0062	13169	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0063	13170	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0064	13169	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0065	13168	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0066	13170	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0067	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909