JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUGT1_chr13_52647836_52705909	0/0	t0068	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0069	13169	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0070	13169	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0071	13121	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0072	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0073	13169	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0074	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0075	13170	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0076	13171	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0077	13169	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0078	13169	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0079	13170	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0080	13169	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0081	13167	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0082	13169	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0083	13171	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0084	13168	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0085	13162	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0086	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0087	13170	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0088	13169	1	0	0	0	1	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0089	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0090	13171	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0091	13171	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0092	13169	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0093	13170	1	0	0	1	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0094	13170	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0095	13170	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0096	13172	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0097	13168	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0098	13169	1	0	0	0	1	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0099	13170	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0100	13168	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0101	13168	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0102	13168	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0103	13169	1	1	0	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0104	13169	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0105	13165	1	0	1	0	0	0	copy fasta	SUGT1	chr13	52647836	52705909
SUGT1_chr13_52647836_52705909	0/0	t0106	13169	1	0	0	0	0	1	copy fasta	SUGT1	chr13	52647836	52705909
SULF1_chr8_69487847_69665912	1/0	t0001	3047	62	16	18	15	2	10	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0002	3047	61	13	3	40	2	3	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/1	t0003	3047	41	13	9	10	6	2	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0004	3047	28	6	3	17	1	1	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0005	3047	15	0	3	6	1	5	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0006	3047	13	1	5	6	0	1	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0007	3047	6	6	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0008	3047	6	0	4	2	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0009	3047	5	4	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0010	3047	5	0	2	0	1	2	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0011	3047	5	2	0	1	0	2	copy fasta	SULF1	chr8	69487847	69665912