JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SULF1_chr8_69487847_69665912	0/0	t0012	3047	4	4	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0013	3047	4	4	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0014	3047	4	0	0	2	0	2	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0015	3047	4	1	0	2	0	1	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0016	3047	3	3	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0017	3047	3	3	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0018	3047	3	3	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0019	3047	2	2	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0020	3047	2	0	2	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0021	3047	2	0	0	0	0	2	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0022	3047	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0023	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0024	3047	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0025	3047	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0026	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0027	3047	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0028	3047	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0029	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0030	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0031	3047	1	0	0	0	1	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0032	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0033	3047	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0034	3047	1	1	0	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0035	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0036	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0037	3047	1	0	1	0	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0038	3047	1	0	0	0	0	1	copy fasta	SULF1	chr8	69487847	69665912
SULF1_chr8_69487847_69665912	0/0	t0039	3047	1	0	0	1	0	0	copy fasta	SULF1	chr8	69487847	69665912
SULF2_chr20_47652406_47790481	0/0	t0001	1196	152	51	19	58	7	17	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0002	1196	66	2	2	53	0	9	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0003	1196	45	13	11	11	1	9	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0004	1200	15	2	3	5	1	4	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0005	1202	14	10	3	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0006	1200	10	0	0	8	0	2	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0007	1196	9	0	3	2	0	4	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0008	1196	9	0	9	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0009	1200	5	0	2	1	1	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0010	1196	4	0	0	4	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0011	1175	3	3	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/1	t0012	1206	3	2	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0013	1196	3	0	3	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0014	1196	3	0	0	3	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0015	1200	2	1	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0016	1196	2	0	0	2	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0017	1196	2	0	0	2	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0018	1196	2	0	0	2	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0019	1196	2	0	2	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0020	1202	1	0	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0021	1196	1	0	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0022	1196	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481