JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SULF2_chr20_47652406_47790481	0/0	t0023	1196	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0024	1196	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0025	1196	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0026	1211	1	0	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0027	1196	1	0	0	1	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0028	1196	1	0	1	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0029	1200	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0030	1200	1	1	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	0/0	t0031	1178	1	0	0	0	0	1	copy fasta	SULF2	chr20	47652406	47790481
SULF2_chr20_47652406_47790481	1/0	t0032	1196	1	0	0	0	0	0	copy fasta	SULF2	chr20	47652406	47790481
SULT1A1_chr16_28600258_28615044	0/0	t0000	0	2	0	0	1	0	1	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	1/0	t0001	682	176	31	12	109	2	21	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0002	682	132	28	21	58	6	19	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/1	t0003	682	83	30	25	18	6	3	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0004	682	16	0	8	7	0	1	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0005	682	8	0	8	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0006	682	5	0	5	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0007	682	3	0	3	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0008	682	2	2	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0009	682	1	0	0	1	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0010	682	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0011	682	1	0	0	0	0	1	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0012	682	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A1_chr16_28600258_28615044	0/0	t0013	682	1	1	0	0	0	0	copy fasta	SULT1A1	chr16	28600258	28615044
SULT1A2_chr16_28586943_28602050	1/0	t0001	144	282	54	32	151	6	38	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/1	t0002	144	87	7	41	28	5	5	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	t0003	144	27	12	6	1	3	5	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	t0004	144	21	20	1	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A2_chr16_28586943_28602050	0/0	t0005	144	1	1	0	0	0	0	copy fasta	SULT1A2	chr16	28586943	28602050
SULT1A3_chr16_30194255_30209310	0/0	t0001	468	153	28	26	68	8	23	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A3_chr16_30194255_30209310	0/0	t0002	468	1	0	0	0	0	1	copy fasta	SULT1A3	chr16	30194255	30209310
SULT1A4_chr16_29454913_29469966	0/0	t0001	473	145	26	28	69	5	17	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	t0002	469	26	4	16	1	1	4	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1A4_chr16_29454913_29469966	0/0	t0003	472	3	0	0	2	0	1	copy fasta	SULT1A4	chr16	29454913	29469966
SULT1B1_chr4_69716167_69765620	0/0	t0001	6128	15	0	1	14	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0002	6126	15	0	3	11	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0003	6092	14	0	0	13	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0004	6132	14	3	2	7	0	2	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0005	6128	13	0	3	7	0	3	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0006	6134	12	0	0	11	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0007	6092	11	0	4	7	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0008	6134	9	0	0	7	0	2	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0009	6130	9	0	0	9	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0010	6130	9	3	1	4	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0011	6124	8	0	4	3	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0012	6126	7	1	1	4	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0013	6136	7	0	2	4	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0014	6128	7	1	3	0	1	2	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	1/0	t0015	6128	7	2	1	2	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/1	t0016	6118	7	1	1	3	0	1	copy fasta	SULT1B1	chr4	69716167	69765620