JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SULT1B1_chr4_69716167_69765620	0/0	t0017	6116	7	2	0	5	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0018	6075	7	6	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0019	6132	6	0	1	5	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0020	6128	6	0	3	0	0	3	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0021	6128	6	0	1	5	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0022	6104	6	0	0	6	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0023	6136	5	0	0	3	0	2	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0024	6132	5	0	0	5	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0025	6120	5	0	2	0	3	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0026	6126	4	0	1	3	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0027	6107	4	4	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0028	6124	4	0	0	4	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0029	6118	4	0	3	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0030	6136	3	0	1	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0031	6134	3	0	1	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0032	6130	3	0	2	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0033	6130	3	0	0	2	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0034	6138	3	0	0	3	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0035	6138	3	1	0	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0036	6136	3	0	0	2	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0037	6132	3	0	0	0	1	2	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0038	6131	3	0	0	3	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0039	6128	3	3	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0040	6126	3	3	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0041	6124	3	0	0	3	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0042	6124	3	0	2	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0043	6116	3	0	3	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0044	6127	3	1	1	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0045	6128	2	0	2	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0046	6140	2	0	2	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0047	6132	2	0	0	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0048	6130	2	0	0	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0049	6126	2	0	2	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0050	6124	2	0	0	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0051	6140	2	0	0	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0052	6106	2	0	0	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0053	6092	2	2	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0054	6146	2	1	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0055	6136	2	2	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0056	6132	2	0	1	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0057	6130	2	0	0	0	2	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0058	6130	2	0	1	0	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0059	6128	2	2	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0060	6124	2	2	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0061	6122	2	2	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0062	6120	2	0	0	2	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0063	6120	2	0	1	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0064	6110	2	1	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0065	6130	2	2	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0066	6140	1	0	0	0	1	0	copy fasta	SULT1B1	chr4	69716167	69765620