JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SULT1B1_chr4_69716167_69765620	0/0	t0067	6130	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0068	6138	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0069	6136	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0070	6134	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0071	6132	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0072	6130	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0073	6128	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0074	6126	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0075	6107	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0076	6146	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0077	6134	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0078	6132	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0079	6130	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0080	6128	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0081	6128	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0082	6124	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0083	6122	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0084	6118	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0085	6109	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0086	6107	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0087	6100	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0088	6100	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0089	6092	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0090	6092	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0091	6092	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0092	6092	1	0	0	0	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0093	6108	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0094	6141	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0095	6092	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0096	6092	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0097	6128	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0098	6144	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0099	6140	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0100	6138	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0101	6136	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0102	6136	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0103	6134	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0104	6134	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0105	6134	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0106	6132	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0107	6132	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0108	6132	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0109	6130	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0110	6130	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0111	6128	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0112	6128	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0113	6128	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0114	6128	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0115	6128	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0116	6126	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620