Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMPR1A_chr10_86751619_86932969	0/0	t0056	4828	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0057	4829	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0058	4829	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0059	4829	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0060	4830	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0061	4831	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0062	4832	1	0	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0063	4832	1	0	0	0	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0064	4832	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0065	4833	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0066	4833	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0067	4835	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0068	4836	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0069	4837	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0070	4837	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0071	4832	1	0	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0072	4832	1	0	0	0	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0073	4833	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0074	4819	1	0	0	0	1	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0075	4819	1	0	0	0	0	1	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0076	4819	1	0	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0077	4819	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0078	4819	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0079	4811	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0080	4819	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0081	4832	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0082	4832	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	t0083	4835	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1B_chr4_94752955_95163448	0/0	t0001	4074	43	4	6	23	4	6	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0002	4061	24	5	8	5	2	4	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/1	t0003	4061	17	0	11	0	1	4	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0004	4062	16	1	9	5	1	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0005	4075	15	6	3	5	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0006	4073	12	0	0	8	0	4	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0007	4076	7	4	0	3	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0008	4061	7	7	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0009	4077	5	2	0	0	0	3	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0010	4069	5	3	2	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0011	4070	5	5	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0012	4073	4	2	2	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0013	4069	3	3	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0014	4070	3	2	1	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0015	4072	3	3	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0016	4060	3	0	3	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0017	4060	3	3	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0018	4062	3	0	0	1	0	2	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0019	4068	2	1	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0020	4072	2	2	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0021	4060	2	2	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0022	4060	2	0	1	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448