JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SULT1B1_chr4_69716167_69765620	0/0	t0117	6126	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0118	6124	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0119	6124	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0120	6122	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0121	6122	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0122	6122	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0123	6122	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0124	6120	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0125	6118	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0126	6116	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0127	6116	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0128	6116	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0129	6114	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0130	6114	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0131	6114	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0132	6112	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0133	6112	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0134	6110	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0135	6108	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0136	6100	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0137	6100	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0138	6096	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0139	6077	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0140	6128	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0141	6133	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0142	6131	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0143	6130	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0144	6128	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0145	6128	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0146	6125	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0147	6123	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0148	6121	1	1	0	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0149	6119	1	0	1	0	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0150	6119	1	0	0	0	1	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0151	6092	1	0	0	0	0	1	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0152	6092	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1B1_chr4_69716167_69765620	0/0	t0153	6092	1	0	0	1	0	0	copy fasta	SULT1B1	chr4	69716167	69765620
SULT1C2_chr2_108283895_108314915	0/0	t0001	1649	149	43	24	67	1	14	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/1	t0002	1648	61	4	26	9	6	15	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	1/0	t0003	1649	54	8	10	16	4	15	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0004	1654	15	0	1	14	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0005	1649	14	12	1	0	0	1	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0006	1650	14	14	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0007	1649	11	3	4	2	2	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0008	1650	7	2	0	5	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0009	1649	4	4	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0010	1648	2	0	0	0	1	1	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0011	1649	2	2	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0012	1654	1	0	0	1	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0013	1649	1	0	0	1	0	0	copy fasta	SULT1C2	chr2	108283895	108314915