JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SULT1C2_chr2_108283895_108314915	0/0	t0014	1649	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0015	1648	1	0	1	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0016	1649	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0017	1649	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0018	1648	1	0	1	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0019	1649	1	1	0	0	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C2_chr2_108283895_108314915	0/0	t0020	1649	1	0	0	1	0	0	copy fasta	SULT1C2	chr2	108283895	108314915
SULT1C3_chr2_108234968_108265886	1/0	t0001	330	152	66	24	34	8	19	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	t0002	330	108	1	19	79	3	6	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	t0003	330	54	21	11	19	0	3	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/1	t0004	330	54	1	16	17	5	14	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	t0005	330	5	0	2	2	0	1	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	t0006	330	2	0	0	1	0	1	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C3_chr2_108234968_108265886	0/0	t0007	330	1	1	0	0	0	0	copy fasta	SULT1C3	chr2	108234968	108265886
SULT1C4_chr2_108372954_108393989	0/1	t0001	1942	150	13	40	70	9	17	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0002	1943	86	34	16	21	4	11	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0003	1943	21	0	0	13	0	8	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0004	1944	13	11	2	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0005	1942	12	11	0	1	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0006	1942	7	7	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0007	1780	6	6	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0008	1941	4	0	2	2	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0009	1943	4	4	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0010	1780	4	0	1	3	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0011	1942	3	0	1	0	0	2	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0012	1942	2	0	0	0	1	1	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0013	1942	2	0	0	2	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0014	1780	2	2	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0015	1942	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0016	1942	1	0	0	1	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0017	1941	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0018	1943	1	0	0	0	0	1	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0019	1942	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	1/0	t0020	1942	1	0	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0021	1943	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0022	1943	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0023	1780	1	0	0	1	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1C4_chr2_108372954_108393989	0/0	t0024	1780	1	1	0	0	0	0	copy fasta	SULT1C4	chr2	108372954	108393989
SULT1E1_chr4_69836212_69865145	1/0	t0001	889	160	47	20	78	6	8	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0002	889	100	21	6	66	2	5	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0003	891	90	9	27	40	2	12	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/1	t0004	889	62	2	17	25	7	10	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0005	890	13	2	3	7	0	1	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0006	892	7	1	0	4	1	1	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0007	891	3	0	0	2	0	1	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0008	889	2	2	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0009	889	2	1	1	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0010	889	1	0	0	1	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0011	889	1	0	0	0	0	1	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0012	889	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145