JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SULT1E1_chr4_69836212_69865145	0/0	t0013	889	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0014	889	1	0	0	1	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0015	889	1	1	0	0	0	0	copy fasta	SULT1E1	chr4	69836212	69865145
SULT1E1_chr4_69836212_69865145	0/0	t0016	891	1	0	0	0	0	1	copy fasta	SULT1E1	chr4	69836212	69865145
SULT2A1_chr19_47865467_47891315	0/0	t0001	1047	204	14	48	116	5	21	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0002	1047	71	28	1	40	1	1	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0003	1047	55	1	10	25	7	12	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	1/1	t0004	1047	38	3	8	17	3	5	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0005	1047	18	12	5	0	0	1	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0006	471	13	1	5	0	0	7	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0007	1047	11	9	2	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0008	1047	9	9	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0009	1047	6	0	2	4	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0010	1047	5	4	1	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0011	1047	1	0	0	0	0	1	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2A1_chr19_47865467_47891315	0/0	t0012	1047	1	1	0	0	0	0	copy fasta	SULT2A1	chr19	47865467	47891315
SULT2B1_chr19_48547172_48604423	1/1	t0001	99	376	98	82	142	12	40	copy fasta	SULT2B1	chr19	48547172	48604423
SULT4A1_chr22_43819509_43867513	0/0	t0001	1622	99	5	8	68	3	15	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0002	1634	96	3	17	65	1	10	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0003	1634	60	22	14	10	6	8	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/1	t0004	1628	29	8	11	1	5	3	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	1/0	t0005	1624	27	9	10	3	1	3	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0006	1628	26	21	3	0	2	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0007	1634	7	0	0	7	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0008	1628	7	7	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0009	1628	6	2	0	4	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0010	1624	3	3	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0011	1640	2	1	0	1	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0012	1634	2	1	1	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0013	1628	2	0	2	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0014	1628	2	2	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0015	1628	2	2	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0016	1622	2	0	2	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0017	1622	2	0	0	2	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0018	1652	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0019	1646	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0020	1634	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0021	1638	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0022	1628	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0023	1618	1	0	0	1	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0024	1622	1	0	0	1	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0025	1622	1	0	0	1	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0026	1616	1	0	1	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0027	1616	1	0	1	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0028	1646	1	0	0	0	0	1	copy fasta	SULT4A1	chr22	43819509	43867513
SULT4A1_chr22_43819509_43867513	0/0	t0029	1628	1	1	0	0	0	0	copy fasta	SULT4A1	chr22	43819509	43867513
SULT6B1_chr2_37162820_37193670	1/1	t0001	146	344	74	72	152	14	30	copy fasta	SULT6B1	chr2	37162820	37193670
SULT6B1_chr2_37162820_37193670	0/0	t0002	142	10	10	0	0	0	0	copy fasta	SULT6B1	chr2	37162820	37193670
SUMF1_chr3_4356146_4472269	0/1	t0001	1023	107	21	23	51	1	10	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0002	1019	93	8	8	61	7	9	copy fasta	SUMF1	chr3	4356146	4472269