JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUMF1_chr3_4356146_4472269	0/0	t0003	1019	59	2	27	22	4	4	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0004	1019	55	5	6	32	0	12	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0005	1019	32	30	2	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0006	1019	10	9	1	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0007	1023	9	8	1	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0008	1019	4	0	2	0	1	1	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0009	1019	4	4	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0010	1019	3	3	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0011	1019	3	3	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0012	1019	2	2	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0013	1019	2	0	0	2	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	1/0	t0014	1023	1	0	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0015	1023	1	0	0	0	1	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0016	1019	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0017	1019	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0018	1019	1	1	0	0	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0019	1019	1	0	0	0	0	1	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0020	1019	1	0	0	1	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0021	1019	1	0	0	1	0	0	copy fasta	SUMF1	chr3	4356146	4472269
SUMF1_chr3_4356146_4472269	0/0	t0022	1019	1	0	0	0	0	1	copy fasta	SUMF1	chr3	4356146	4472269
SUMF2_chr7_56059286_56085670	1/0	t0001	1085	156	40	37	58	3	17	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/1	t0002	1085	84	12	10	55	0	6	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0003	1084	71	16	22	13	6	14	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0004	1086	52	10	3	34	4	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0005	1087	27	3	3	21	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0006	1086	9	3	2	3	0	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0007	1084	2	0	0	0	0	2	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0008	1085	2	1	1	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0009	1084	1	1	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0010	1086	1	0	0	1	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0011	1085	1	0	0	0	1	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0012	1086	1	0	0	1	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0013	1086	1	0	0	1	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0014	1085	1	0	0	0	0	1	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0015	1085	1	0	0	1	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0016	1086	1	1	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMF2_chr7_56059286_56085670	0/0	t0017	1086	1	1	0	0	0	0	copy fasta	SUMF2	chr7	56059286	56085670
SUMO1_chr2_202201182_202243597	1/1	t0001	1218	370	85	76	144	18	45	copy fasta	SUMO1	chr2	202201182	202243597
SUMO1_chr2_202201182_202243597	0/0	t0002	1218	1	1	0	0	0	0	copy fasta	SUMO1	chr2	202201182	202243597
SUMO1_chr2_202201182_202243597	0/0	t0003	1218	1	1	0	0	0	0	copy fasta	SUMO1	chr2	202201182	202243597
SUMO1_chr2_202201182_202243597	0/0	t0004	1218	1	0	0	0	0	1	copy fasta	SUMO1	chr2	202201182	202243597
SUMO1_chr2_202201182_202243597	0/0	t0005	1218	1	1	0	0	0	0	copy fasta	SUMO1	chr2	202201182	202243597
SUMO2_chr17_75160586_75187959	0/0	t0001	2886	142	2	25	103	5	7	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/1	t0002	2884	98	5	26	40	6	20	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0003	2884	57	36	9	4	0	8	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0004	2884	15	15	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0005	2884	9	8	1	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0006	2884	7	1	1	2	1	2	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0007	2883	6	6	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0008	2885	6	0	1	4	0	1	copy fasta	SUMO2	chr17	75160586	75187959