JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUMO2_chr17_75160586_75187959	0/0	t0009	2886	5	0	0	5	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0010	2885	4	1	2	0	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0011	2884	4	3	1	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0012	2880	3	3	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0013	2884	3	1	1	0	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0014	2885	3	2	0	1	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0015	2883	2	1	1	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0016	2885	2	1	0	0	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0017	2884	2	2	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	1/0	t0018	2879	2	1	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0019	2885	2	0	0	2	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0020	2884	2	0	2	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0021	2884	2	0	2	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0022	2887	2	0	0	1	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0023	2879	1	0	0	1	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0024	2883	1	1	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0025	2880	1	1	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0026	2881	1	1	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0027	2885	1	0	1	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0028	2885	1	0	0	0	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0029	2884	1	1	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0030	2884	1	1	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0031	2884	1	0	0	0	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0032	2884	1	0	0	0	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0033	2884	1	0	0	1	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0034	2884	1	0	0	0	0	1	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0035	2886	1	0	1	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0036	2885	1	0	1	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0037	2886	1	0	1	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0038	2886	1	0	0	1	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0039	2886	1	0	0	1	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0040	2886	1	0	0	1	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0041	2884	1	1	0	0	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO2_chr17_75160586_75187959	0/0	t0042	2884	1	0	0	1	0	0	copy fasta	SUMO2	chr17	75160586	75187959
SUMO3_chr21_44800617_44823062	1/1	t0001	1429	316	36	58	171	12	37	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0002	1429	30	18	5	0	4	3	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0003	1429	15	9	6	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0004	1429	10	9	1	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0005	1429	7	7	0	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0006	1429	5	5	0	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0007	1429	5	3	2	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0008	1429	4	4	0	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0009	1429	3	0	0	3	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0010	1429	3	0	2	0	0	1	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0011	1429	2	2	0	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0012	1429	2	0	0	2	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0013	1429	1	1	0	0	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0014	1429	1	0	0	1	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0015	1429	1	0	0	1	0	0	copy fasta	SUMO3	chr21	44800617	44823062
SUMO3_chr21_44800617_44823062	0/0	t0016	1429	1	0	0	0	0	1	copy fasta	SUMO3	chr21	44800617	44823062