JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUMO4_chr6_149395262_149406278	0/0	t0001	730	230	74	29	112	5	10	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	t0002	730	110	2	27	53	6	22	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/1	t0003	730	63	18	21	10	3	10	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	t0004	730	5	0	0	0	0	5	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	t0005	730	5	4	1	0	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	t0006	730	2	2	0	0	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	t0007	730	1	0	0	0	0	1	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	1/0	t0008	730	1	0	0	0	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUMO4_chr6_149395262_149406278	0/0	t0009	730	1	0	0	1	0	0	copy fasta	SUMO4	chr6	149395262	149406278
SUN1_chr7_827476_879934	1/1	t0001	1653	338	81	67	131	12	45	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0002	1653	31	0	0	30	0	1	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0003	1653	10	0	0	10	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0004	1653	6	0	0	6	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0005	1653	4	3	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0006	1653	3	3	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0007	1653	3	3	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0008	1653	2	0	0	2	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0009	1653	2	2	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0010	1653	2	0	1	0	1	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0011	1653	2	0	1	0	1	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0012	1653	2	1	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0013	1653	2	0	2	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0014	1653	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0015	1653	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0016	1653	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0017	1653	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0018	1653	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0019	1653	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0020	1653	1	0	1	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0021	1653	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0022	1653	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0023	1653	1	0	0	1	0	0	copy fasta	SUN1	chr7	827476	879934
SUN1_chr7_827476_879934	0/0	t0024	1653	1	1	0	0	0	0	copy fasta	SUN1	chr7	827476	879934
SUN2_chr22_38729734_38760998	1/0	t0001	1807	166	25	42	70	8	20	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/1	t0002	1807	107	13	10	66	3	14	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0003	1807	20	12	5	0	1	2	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0004	1807	18	10	5	0	0	3	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0005	1807	18	17	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0006	1807	8	8	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0007	1807	3	3	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0008	1807	3	3	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0009	1807	2	0	0	2	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0010	1807	1	0	0	0	0	1	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0011	1807	1	0	1	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0012	1807	1	1	0	0	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0013	1807	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN2_chr22_38729734_38760998	0/0	t0014	1807	1	0	0	1	0	0	copy fasta	SUN2	chr22	38729734	38760998
SUN3_chr7_47982148_48034107	1/1	t0001	352	399	86	69	195	14	33	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	t0002	352	8	8	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	t0003	352	3	3	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107