JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUN3_chr7_47982148_48034107	0/0	t0004	352	1	0	0	0	0	1	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	t0005	352	1	0	1	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	t0006	352	1	0	0	1	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN3_chr7_47982148_48034107	0/0	t0007	352	1	1	0	0	0	0	copy fasta	SUN3	chr7	47982148	48034107
SUN5_chr20_32978775_33009433	1/1	t0001	113	381	92	80	159	14	34	copy fasta	SUN5	chr20	32978775	33009433
SUN5_chr20_32978775_33009433	0/0	t0002	113	1	0	0	1	0	0	copy fasta	SUN5	chr20	32978775	33009433
SUOX_chr12_55992276_56010525	1/1	t0001	682	415	95	78	188	18	34	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	t0002	682	2	2	0	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	t0003	682	2	0	2	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	t0004	682	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	t0005	682	1	0	0	1	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUOX_chr12_55992276_56010525	0/0	t0006	682	1	1	0	0	0	0	copy fasta	SUOX	chr12	55992276	56010525
SUPT16H_chr14_21346476_21389019	0/1	t0001	1290	220	82	32	84	10	11	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	1/0	t0002	1290	43	0	14	19	2	7	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0003	1290	21	4	0	17	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0004	1290	9	0	7	0	2	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0005	1290	3	3	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0006	1290	3	0	0	3	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0007	1290	2	2	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0008	1290	2	2	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0009	1290	1	0	0	1	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0010	1290	1	1	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0011	1290	1	1	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0012	1290	1	0	1	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT16H_chr14_21346476_21389019	0/0	t0013	1290	1	1	0	0	0	0	copy fasta	SUPT16H	chr14	21346476	21389019
SUPT20HL1_chrX_24355639_24372839	1/0	t0001	4538	118	3	25	73	7	9	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/1	t0002	4538	53	3	8	29	3	9	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0003	4538	46	28	6	9	1	2	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0004	4538	33	0	0	29	0	4	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0005	4538	30	18	6	2	0	4	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0006	4538	6	5	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0007	4538	4	4	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0008	4538	3	0	0	3	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0009	4538	2	0	2	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0010	4538	2	2	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0011	4538	2	0	0	0	0	2	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0012	4538	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0013	4538	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0014	4538	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0015	4542	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0016	4538	1	0	0	0	0	1	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0017	4538	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0018	4538	1	0	0	0	0	1	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0019	4538	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0020	4538	1	0	1	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0021	4538	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0022	4538	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0023	4539	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0024	4542	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0025	4538	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839