JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUPT20HL1_chrX_24355639_24372839	0/0	t0026	4538	1	0	0	1	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0027	4538	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL1_chrX_24355639_24372839	0/0	t0028	4538	1	1	0	0	0	0	copy fasta	SUPT20HL1	chrX	24355639	24372839
SUPT20HL2_chrX_24303210_24319069	0/1	t0001	3406	124	4	29	75	4	11	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0002	3410	26	11	7	7	1	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0003	3407	12	12	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0004	3405	11	1	0	9	1	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0005	3410	9	1	2	4	0	2	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0006	3411	9	4	0	5	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0007	3414	7	7	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	1/0	t0008	3407	7	0	0	5	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0009	3414	5	5	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0010	3406	4	0	1	1	0	2	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0011	3406	4	0	0	4	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0012	3405	3	0	0	3	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0013	3409	3	1	1	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0014	3404	2	0	1	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0015	3406	2	0	0	1	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0016	3407	2	0	2	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0017	3409	2	2	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0018	3408	2	1	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0019	3409	2	1	0	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0020	3411	2	0	0	0	0	2	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0021	3405	2	0	0	2	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0022	3413	2	2	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0023	3406	2	0	0	2	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0024	3404	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0025	3412	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0026	3240	1	0	0	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0027	3584	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0028	3413	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0029	3414	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0030	3406	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0031	3406	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0032	3411	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0033	3398	1	0	0	0	1	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0034	3405	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0035	3405	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0036	3405	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0037	3405	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0038	3403	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0039	3405	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0040	3406	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0041	3406	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0042	3406	1	0	0	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0043	3408	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0044	3409	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0045	3409	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0046	3409	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0047	3414	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069