JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUPT20HL2_chrX_24303210_24319069	0/0	t0048	3415	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0049	3348	1	0	0	0	1	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0050	3411	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0051	3412	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0052	3412	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0053	3412	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0054	3414	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0055	3381	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0056	3397	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0057	3411	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0058	3411	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0059	3412	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0060	3413	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0061	3408	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0062	3410	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0063	3415	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0064	3407	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0065	3412	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0066	3406	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0067	3240	1	0	1	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0068	3244	1	0	0	1	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0069	3243	1	0	0	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0070	3245	1	0	0	0	0	1	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0071	3078	1	1	0	0	0	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20HL2_chrX_24303210_24319069	0/0	t0072	3407	1	0	0	0	1	0	copy fasta	SUPT20HL2	chrX	24303210	24319069
SUPT20H_chr13_37004312_37064688	0/1	t0001	584	281	85	54	108	7	26	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	1/0	t0002	584	16	2	10	0	1	2	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	t0003	584	4	0	0	4	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	t0004	584	2	0	2	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT20H_chr13_37004312_37064688	0/0	t0005	584	1	1	0	0	0	0	copy fasta	SUPT20H	chr13	37004312	37064688
SUPT3H_chr6_44821726_45382934	0/0	t0001	3253	97	19	18	47	2	11	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0002	3259	64	1	16	41	2	4	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0003	3253	25	19	2	1	0	3	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0004	3258	21	0	11	7	1	2	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0005	3258	11	10	1	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0006	3258	9	8	1	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0007	3258	5	4	0	0	0	1	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0008	3253	5	5	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0009	3259	4	1	0	0	0	3	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0010	3258	4	4	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0011	3255	3	0	1	0	0	2	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0012	3253	2	2	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0013	3253	2	2	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0014	3259	2	2	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0015	3258	1	0	1	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0016	3259	1	0	1	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0017	3253	1	1	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0018	3253	1	0	1	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0019	3253	1	0	1	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0020	3253	1	0	0	0	1	0	copy fasta	SUPT3H	chr6	44821726	45382934