JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUPT3H_chr6_44821726_45382934	0/0	t0021	3258	1	1	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT3H_chr6_44821726_45382934	0/0	t0022	3253	1	1	0	0	0	0	copy fasta	SUPT3H	chr6	44821726	45382934
SUPT4H1_chr17_58340178_58357201	1/1	t0001	1135	292	55	53	143	4	35	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0002	1132	68	1	10	48	4	5	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0003	1135	54	24	19	0	7	4	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0004	1135	6	6	0	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0005	1135	5	5	0	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0006	1135	3	3	0	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0007	1135	2	2	0	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0008	1135	2	2	0	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0009	1135	1	0	0	1	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0010	1135	1	0	0	0	1	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0011	1135	1	0	1	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0012	1135	1	0	1	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0013	1135	1	1	0	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT4H1_chr17_58340178_58357201	0/0	t0014	1135	1	1	0	0	0	0	copy fasta	SUPT4H1	chr17	58340178	58357201
SUPT5H_chr19_39440582_39481670	0/0	t0001	415	231	63	38	94	11	25	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	1/1	t0002	415	132	17	20	72	5	16	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	t0003	415	8	8	0	0	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	t0004	415	2	0	0	2	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	t0005	415	2	0	2	0	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	t0006	415	1	1	0	0	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	t0007	415	1	1	0	0	0	0	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT5H_chr19_39440582_39481670	0/0	t0008	303	1	0	0	0	0	1	copy fasta	SUPT5H	chr19	39440582	39481670
SUPT6H_chr17_28657205_28707679	0/1	t0001	1224	180	52	36	69	3	19	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	1/0	t0002	1224	51	19	11	12	3	5	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	t0003	1224	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	t0004	1224	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	t0005	1224	1	1	0	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	t0006	1224	1	0	0	1	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT6H_chr17_28657205_28707679	0/0	t0007	1224	1	0	1	0	0	0	copy fasta	SUPT6H	chr17	28657205	28707679
SUPT7L_chr2_27645809_27668614	0/0	t0001	3048	125	7	22	79	4	13	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0002	3052	112	21	16	61	5	9	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/1	t0003	3052	79	24	16	17	7	14	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0004	3052	17	12	4	0	0	1	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0005	3052	11	10	1	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0006	3052	4	1	3	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0007	3052	2	2	0	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0008	3052	2	2	0	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0009	3052	2	1	1	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0010	3048	2	0	0	2	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	1/0	t0011	3052	2	1	0	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0012	3052	1	1	0	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0013	3052	1	0	0	1	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0014	3052	1	0	0	1	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0015	3052	1	0	1	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0016	3048	1	0	0	0	0	1	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0017	3048	1	0	1	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0018	3048	1	0	0	1	0	0	copy fasta	SUPT7L	chr2	27645809	27668614
SUPT7L_chr2_27645809_27668614	0/0	t0019	3052	1	0	1	0	0	0	copy fasta	SUPT7L	chr2	27645809	27668614