Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMPR1B_chr4_94752955_95163448	0/0	t0023	4070	2	2	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0024	4075	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0025	4062	1	0	1	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	1/0	t0026	4072	1	0	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0027	4073	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0028	4071	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0029	4073	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0030	4074	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0031	4072	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0032	4074	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0033	4074	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0034	4075	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0035	4075	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0036	4074	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0037	4075	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0038	4076	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0039	4072	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0040	4067	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0041	4067	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0042	4068	1	0	1	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0043	4069	1	0	1	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0044	4068	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0045	4069	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0046	4069	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0047	4069	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0048	4062	1	0	0	0	1	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0049	4060	1	0	1	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0050	4061	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0051	4060	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0052	4060	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0053	4060	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0054	4062	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0055	4069	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0056	4062	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0057	4063	1	0	0	1	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0058	4069	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0059	4072	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0060	4061	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	t0061	4061	1	0	0	0	1	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR2_chr2_202371327_202572749	0/0	t0001	8952	69	22	13	26	2	6	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0002	8953	29	0	5	13	2	9	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0003	8958	15	0	12	1	2	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	1/0	t0004	8952	13	0	8	2	0	2	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0005	8952	13	13	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0006	8953	7	0	4	3	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0007	8955	7	0	2	3	0	2	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0008	8955	6	6	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0009	8952	5	0	0	5	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0010	8953	4	4	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0011	8943	3	3	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749