JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUPV3L1_chr10_69175234_69214093	1/1	t0001	117	316	89	34	148	9	34	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	t0002	118	30	1	9	8	6	6	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	t0003	116	7	1	3	2	1	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SUPV3L1_chr10_69175234_69214093	0/0	t0004	117	1	1	0	0	0	0	copy fasta	SUPV3L1	chr10	69175234	69214093
SURF1_chr9_133346758_133361487	1/1	t0001	190	435	97	76	196	18	46	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	t0002	190	7	0	2	5	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	t0003	190	1	1	0	0	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF1_chr9_133346758_133361487	0/0	t0004	190	1	0	0	1	0	0	copy fasta	SURF1	chr9	133346758	133361487
SURF2_chr9_133351550_133366158	1/1	t0001	63	444	100	80	202	18	42	copy fasta	SURF2	chr9	133351550	133366158
SURF2_chr9_133351550_133366158	0/0	t0002	63	4	0	4	0	0	0	copy fasta	SURF2	chr9	133351550	133366158
SURF4_chr9_133356464_133381060	1/0	t0001	2121	188	36	42	74	12	23	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/1	t0002	2121	102	4	34	45	2	16	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0003	2121	48	1	0	46	0	1	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0004	2121	9	9	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0005	2121	8	7	1	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0006	2121	8	7	0	0	1	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0007	2121	7	0	0	7	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0008	2124	7	0	2	5	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0009	2117	5	5	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0010	2123	5	5	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0011	2119	5	5	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0012	2121	4	0	0	0	0	4	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0013	2121	2	0	0	1	1	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0014	2121	2	2	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0015	2121	2	2	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0016	2121	2	2	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0017	2121	2	2	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0018	2121	2	2	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0019	2099	2	2	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0020	2121	1	0	1	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0021	2121	1	0	0	1	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0022	2121	1	0	0	1	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0023	2121	1	0	1	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0024	2121	1	1	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0025	2121	1	0	1	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0026	2121	1	0	0	1	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0027	2121	1	1	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0028	2121	1	1	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0029	2121	1	1	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0030	2121	1	1	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0031	2121	1	1	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0032	2121	1	1	0	0	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF4_chr9_133356464_133381060	0/0	t0033	2121	1	0	0	1	0	0	copy fasta	SURF4	chr9	133356464	133381060
SURF6_chr9_133323776_133341188	1/0	t0001	3150	181	28	27	97	12	16	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/1	t0002	3150	103	3	29	48	2	20	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0003	3150	14	9	4	0	1	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0004	3150	12	1	2	5	2	2	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0005	3150	11	0	4	7	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0006	3149	9	1	3	5	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0007	3150	7	7	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188