JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SURF6_chr9_133323776_133341188	0/0	t0008	3150	7	6	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0009	3124	5	5	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0010	3150	4	4	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0011	3150	4	3	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0012	3148	4	3	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0013	3150	3	3	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0014	3150	3	0	0	3	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0015	3150	3	3	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0016	3150	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0017	3150	2	1	0	0	1	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0018	3150	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0019	3150	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0020	3150	2	0	0	2	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0021	3150	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0022	3150	2	2	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0023	3150	1	0	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0024	3150	1	0	0	0	0	1	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0025	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0026	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0027	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0028	3150	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0029	3150	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0030	3150	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0031	3150	1	0	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0032	3150	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0033	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0034	3150	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0035	3150	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0036	3150	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0037	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0038	3150	1	0	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0039	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0040	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0041	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0042	3150	1	0	0	0	0	1	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0043	3150	1	0	0	1	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0044	3150	1	0	1	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0045	3148	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0046	3148	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0047	3148	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SURF6_chr9_133323776_133341188	0/0	t0048	3123	1	1	0	0	0	0	copy fasta	SURF6	chr9	133323776	133341188
SUSD1_chr9_112035783_112180297	1/1	t0001	772	189	50	45	67	11	14	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	t0002	772	51	0	4	39	1	7	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	t0003	772	51	15	12	14	2	8	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	t0004	772	40	12	5	16	0	7	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	t0005	771	4	4	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	t0006	772	1	1	0	0	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	t0007	772	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD1_chr9_112035783_112180297	0/0	t0008	772	1	0	0	1	0	0	copy fasta	SUSD1	chr9	112035783	112180297
SUSD2_chr22_24176487_24194106	1/1	t0001	704	254	42	54	106	17	33	copy fasta	SUSD2	chr22	24176487	24194106