JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUSD2_chr22_24176487_24194106	0/0	t0002	704	141	32	13	84	1	11	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0003	704	10	10	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0004	704	8	0	0	3	0	5	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0005	704	3	0	3	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0006	704	2	2	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0007	704	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0008	704	1	1	0	0	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0009	704	1	0	0	0	0	1	copy fasta	SUSD2	chr22	24176487	24194106
SUSD2_chr22_24176487_24194106	0/0	t0010	704	1	0	0	1	0	0	copy fasta	SUSD2	chr22	24176487	24194106
SUSD3_chr9_93053701_93090133	1/1	t0001	429	339	94	47	144	10	42	copy fasta	SUSD3	chr9	93053701	93090133
SUSD3_chr9_93053701_93090133	0/0	t0002	429	1	0	1	0	0	0	copy fasta	SUSD3	chr9	93053701	93090133
SUSD4_chr1_223215831_223369176	1/1	t0001	1517	244	60	46	95	10	31	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0002	1517	20	5	0	15	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0003	1517	2	2	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0004	1517	2	2	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0005	1517	2	0	0	1	0	1	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0006	1517	1	0	0	0	0	1	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0007	1517	1	0	0	0	0	1	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0008	1517	1	0	0	1	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0009	1517	1	1	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0010	1517	1	1	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD4_chr1_223215831_223369176	0/0	t0011	1517	1	1	0	0	0	0	copy fasta	SUSD4	chr1	223215831	223369176
SUSD5_chr3_33145043_33223810	0/0	t0001	2713	137	5	21	96	2	13	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/1	t0002	2713	80	1	20	42	2	14	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0003	2713	51	34	6	9	0	2	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0004	2712	47	8	12	17	2	8	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	1/0	t0005	2713	25	11	11	0	2	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0006	2714	17	16	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0007	2713	10	0	0	10	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0008	2713	8	5	1	0	0	2	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0009	2713	4	4	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0010	2714	2	0	0	0	2	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0011	2712	2	0	0	0	0	2	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0012	2713	2	2	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0013	2713	2	0	0	2	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0014	2713	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0015	2712	1	0	0	0	0	1	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0016	2713	1	0	0	1	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0017	2713	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0018	2713	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0019	2712	1	0	0	0	0	1	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0020	2747	1	0	0	1	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0021	2712	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0022	2713	1	0	0	0	0	1	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0023	2713	1	0	1	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0024	2678	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0025	2748	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0026	2713	1	0	0	1	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0027	2713	1	0	0	1	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0028	2713	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810