JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUSD5_chr3_33145043_33223810	0/0	t0029	2713	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD5_chr3_33145043_33223810	0/0	t0030	2713	1	1	0	0	0	0	copy fasta	SUSD5	chr3	33145043	33223810
SUSD6_chr14_69606596_69720144	0/0	t0001	4479	82	26	17	31	2	6	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0002	4478	30	1	3	24	2	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	1/0	t0003	4479	26	0	3	18	0	4	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/1	t0004	4478	18	7	0	0	3	7	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0005	4480	17	8	3	3	0	3	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0006	4478	12	6	2	2	2	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0007	4478	7	1	3	1	0	2	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0008	4479	6	0	0	6	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0009	4477	5	5	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0010	4478	5	4	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0011	4478	5	5	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0012	4478	5	3	2	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0013	4478	4	4	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0014	4479	4	0	0	4	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0015	4479	4	1	0	2	1	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0016	4478	4	0	0	0	2	2	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0017	4479	3	0	0	3	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0018	4478	3	0	0	2	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0019	4479	3	0	0	3	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0020	4480	3	0	0	2	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0021	4479	2	1	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0022	4479	2	0	0	2	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0023	4479	2	1	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0024	4479	2	2	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0025	4479	2	0	0	1	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0026	4479	2	2	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0027	4479	1	0	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0028	4477	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0029	4480	1	0	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0030	4478	1	0	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0031	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0032	4477	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0033	4480	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0034	4478	1	0	0	0	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0035	4480	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0036	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0037	4478	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0038	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0039	4480	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0040	4478	1	0	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0041	4479	1	0	0	0	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0042	4480	1	0	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0043	4478	1	0	0	0	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0044	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0045	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0046	4479	1	0	0	0	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0047	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0048	4479	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144