JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SUSD6_chr14_69606596_69720144	0/0	t0049	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0050	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0051	4480	1	0	0	0	0	1	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0052	4479	1	0	0	1	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0053	4478	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0054	4479	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0055	4480	1	1	0	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUSD6_chr14_69606596_69720144	0/0	t0056	4478	1	0	1	0	0	0	copy fasta	SUSD6	chr14	69606596	69720144
SUV39H1_chrX_48691734_48714016	0/1	t0001	1498	131	21	24	60	7	18	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	1/0	t0002	1498	111	46	23	27	4	10	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	t0003	1498	5	5	0	0	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	t0004	1500	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	t0005	1497	1	0	1	0	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	t0006	1499	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	t0007	1498	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H1_chrX_48691734_48714016	0/0	t0008	1498	1	0	0	1	0	0	copy fasta	SUV39H1	chrX	48691734	48714016
SUV39H2_chr10_14873866_14909315	1/1	t0001	1827	370	81	55	184	12	36	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0002	1827	23	2	13	1	1	6	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0003	1827	16	1	0	13	0	2	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0004	1827	4	4	0	0	0	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0005	1827	2	2	0	0	0	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0006	1827	1	1	0	0	0	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0007	1827	1	0	1	0	0	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0008	1827	1	1	0	0	0	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0009	1827	1	0	1	0	0	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUV39H2_chr10_14873866_14909315	0/0	t0010	1827	1	0	0	0	1	0	copy fasta	SUV39H2	chr10	14873866	14909315
SUZ12_chr17_31932007_32006038	1/1	t0001	2276	214	47	48	85	8	24	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0002	2276	14	0	6	0	3	5	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0003	2277	8	0	0	6	1	1	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0004	2275	7	6	1	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0005	2276	7	7	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0006	2277	5	5	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0007	2276	4	3	1	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0008	2276	3	3	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0009	2275	2	1	0	0	0	1	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0010	2275	2	1	0	0	0	1	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0011	2276	2	2	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0012	2275	2	2	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0013	2275	1	1	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0014	2276	1	0	1	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0015	2276	1	0	0	1	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0016	2276	1	0	0	1	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0017	2276	1	0	1	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0018	2277	1	1	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0019	2277	1	1	0	0	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0020	2277	1	0	0	0	0	1	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0021	2275	1	0	0	0	0	1	copy fasta	SUZ12	chr17	31932007	32006038
SUZ12_chr17_31932007_32006038	0/0	t0022	2276	1	0	0	1	0	0	copy fasta	SUZ12	chr17	31932007	32006038
SV2A_chr1_149898318_149922844	1/1	t0001	2150	252	75	48	92	7	28	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0002	2150	39	0	3	26	5	5	copy fasta	SV2A	chr1	149898318	149922844