JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SV2A_chr1_149898318_149922844	0/0	t0003	2150	25	1	3	13	0	8	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0004	2150	12	1	7	0	2	2	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0005	2150	12	12	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0006	2150	7	0	0	7	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0007	2150	4	0	4	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0008	2150	2	1	0	0	1	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0009	2150	2	0	0	2	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0010	2150	1	0	0	0	0	1	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0011	2150	1	0	0	0	0	1	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0012	2150	1	1	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0013	2150	1	0	1	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0014	2150	1	0	0	0	0	1	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0015	2150	1	1	0	0	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0016	2150	1	0	0	0	1	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0017	2150	1	0	0	1	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2A_chr1_149898318_149922844	0/0	t0018	2150	1	0	0	1	0	0	copy fasta	SV2A	chr1	149898318	149922844
SV2B_chr15_91095257_91307565	0/0	t0001	10512	38	2	14	8	1	13	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0002	10512	19	13	5	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0003	10512	18	5	2	4	0	7	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0004	10510	13	12	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/1	t0005	10512	8	2	1	2	2	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0006	10511	6	6	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0007	10872	5	0	0	3	0	2	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0008	10510	5	5	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0009	10510	5	0	4	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0010	10512	5	0	2	3	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0011	10510	4	4	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0012	10512	4	3	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0013	10510	3	3	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0014	10495	3	0	0	3	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0015	10512	3	0	0	3	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0016	10872	3	0	1	0	0	2	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0017	10495	3	0	0	1	0	2	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0018	10512	3	0	3	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0019	10537	2	2	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0020	10510	2	0	0	1	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0021	10512	2	0	2	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0022	10510	2	2	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0023	10510	2	0	1	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0024	10509	2	2	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0025	10510	2	2	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0026	10510	2	2	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0027	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0028	10621	1	0	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0029	10871	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0030	10872	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0031	10511	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0032	10482	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0033	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0034	10621	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565