JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SV2B_chr15_91095257_91307565	0/0	t0035	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0036	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0037	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0038	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0039	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0040	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0041	10495	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0042	10510	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0043	10482	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0044	10512	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0045	10512	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0046	10512	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0047	10512	1	0	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0048	10512	1	0	0	0	1	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0049	10512	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0050	10566	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0051	10566	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0052	10510	1	0	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0053	10512	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0054	10512	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0055	10512	1	0	0	0	1	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0056	10540	1	0	0	0	1	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0057	10512	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0058	10512	1	0	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0059	10512	1	0	0	0	1	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0060	10512	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0061	10512	1	0	0	0	1	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0062	10512	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0063	10512	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0064	10512	1	0	1	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0065	10512	1	0	0	1	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	1/0	t0066	10512	1	0	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0067	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0068	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0069	10512	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0070	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0071	10510	1	1	0	0	0	0	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0072	10510	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0073	10512	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0074	10512	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0075	10512	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2B_chr15_91095257_91307565	0/0	t0076	10512	1	0	0	0	0	1	copy fasta	SV2B	chr15	91095257	91307565
SV2C_chr5_76078383_76338956	0/0	t0001	8641	9	0	2	5	0	2	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0002	8640	7	7	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0003	8641	7	0	2	5	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0004	8646	6	5	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0005	8641	5	0	0	3	0	2	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0006	8641	5	1	2	0	0	2	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0007	8643	4	4	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0008	8640	4	0	1	3	0	0	copy fasta	SV2C	chr5	76078383	76338956