JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SV2C_chr5_76078383_76338956	0/0	t0009	8623	4	4	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0010	8641	3	0	2	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0011	8640	3	1	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0012	8644	3	2	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0013	8624	3	3	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0014	8641	3	0	1	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0015	8642	3	0	0	1	0	2	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0016	8642	3	1	1	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0017	8643	2	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0018	8641	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0019	8642	2	0	1	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0020	8641	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0021	8640	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0022	8641	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0023	8642	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0024	8640	2	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0025	8624	2	2	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0026	8623	2	2	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0027	8643	2	0	2	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0028	8640	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0029	8640	2	0	1	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/1	t0030	8644	2	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0031	8640	2	0	1	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0032	8641	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0033	8644	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0034	8644	2	0	0	2	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0035	8641	2	0	1	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0036	8643	2	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0037	8640	2	0	1	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0038	8644	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0039	8644	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0040	8638	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0041	8641	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0042	8641	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0043	8641	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0044	8645	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0045	8643	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0046	8643	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0047	8640	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0048	8643	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0049	8623	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0050	8623	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0051	8642	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0052	8642	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0053	8640	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0054	8644	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0055	8643	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0056	8644	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0057	8640	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0058	8643	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956