JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SV2C_chr5_76078383_76338956	0/0	t0059	8645	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0060	8641	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0061	8641	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0062	8640	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0063	8644	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0064	8642	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0065	8641	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0066	8644	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0067	8641	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0068	8641	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0069	8644	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0070	8640	1	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0071	8639	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0072	8641	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0073	8642	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0074	8638	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0075	8642	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0076	8643	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0077	8640	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0078	8643	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0079	8644	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0080	8644	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0081	8641	1	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0082	8639	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0083	8640	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0084	8641	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0085	8625	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0086	8643	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0087	8622	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0088	8624	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0089	8624	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0090	8640	1	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0091	8642	1	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0092	8644	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0093	8642	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0094	8640	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0095	8646	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0096	8639	1	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0097	8641	1	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0098	8640	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0099	8641	1	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0100	8642	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0101	8643	1	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0102	8641	1	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0103	8646	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0104	8640	1	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0105	8641	1	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0106	8622	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0107	8623	1	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0108	8641	1	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956