JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SV2C_chr5_76078383_76338956	0/0	t0109	8625	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0110	8639	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0111	8641	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0112	8640	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0113	8644	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0114	8642	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0115	8644	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0116	8645	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0117	8642	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0118	8641	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0119	8644	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0120	8644	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0121	8639	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0122	8639	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0123	8641	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0124	8643	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0125	8645	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0126	8641	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	1/0	t0127	8641	1	0	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0128	8644	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0129	8646	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0130	8647	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0131	8640	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0132	8624	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0133	8640	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0134	8641	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0135	8643	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0136	8642	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0137	8643	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0138	8641	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0139	8640	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0140	8643	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0141	8646	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0142	8642	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0143	8643	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0144	8644	1	0	0	0	0	1	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0145	8641	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0146	8640	1	0	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0147	8625	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0148	8641	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0149	8640	1	1	0	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0150	8640	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0151	8641	1	0	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0152	8640	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0153	8641	1	0	1	0	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0154	8641	1	0	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0155	8642	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0156	8643	1	0	0	0	1	0	copy fasta	SV2C	chr5	76078383	76338956
SV2C_chr5_76078383_76338956	0/0	t0157	8645	1	0	0	1	0	0	copy fasta	SV2C	chr5	76078383	76338956
SVBP_chr1_42802052_42822397	1/1	t0001	607	119	22	20	64	2	9	copy fasta	SVBP	chr1	42802052	42822397