Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BMPR2_chr2_202371327_202572749	0/0	t0012	8952	3	0	1	1	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0013	8955	3	3	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0014	8961	3	3	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/1	t0015	8961	3	0	1	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0016	8952	2	0	1	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0017	8952	2	2	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0018	8959	2	0	2	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0019	8974	2	2	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0020	8943	1	0	0	1	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0021	8940	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0022	8943	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0023	8944	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0024	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0025	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0026	8952	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0027	8952	1	0	1	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0028	8952	1	0	0	0	1	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0029	8952	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0030	8952	1	0	1	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0031	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0032	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0033	8952	1	0	1	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0034	8952	1	0	0	0	1	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0035	8952	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0036	8953	1	0	1	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0037	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0038	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0039	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0040	8952	1	0	0	1	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0041	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0042	8952	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0043	8952	1	0	0	1	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0044	8952	1	0	0	1	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0045	8955	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0046	8956	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0047	8958	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0048	8955	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0049	8958	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0050	8959	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0051	8962	1	0	1	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	t0052	8985	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMS1_chr10_42777795_42839937	0/1	t0001	3910	145	33	29	67	4	11	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0002	3910	71	3	8	41	5	14	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0003	3900	45	19	16	3	0	7	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0004	3904	34	15	5	12	0	2	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0005	3905	34	0	0	33	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	1/0	t0006	3911	7	1	3	0	1	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0007	3905	6	1	2	0	3	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0008	3905	5	2	3	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	t0009	3910	4	0	2	0	2	0	copy fasta	BMS1	chr10	42777795	42839937